Index A | B | C | D | E | F | G | H | I | L | M | N | O | R | S | T | U A acronym (bioimageloader.base.DatasetInterface property) anno_dict (bioimageloader.base.MaskDataset property) (bioimageloader.collections.BBBC004 property) (bioimageloader.collections.BBBC006 property) (bioimageloader.collections.BBBC007 property) (bioimageloader.collections.BBBC008 property) (bioimageloader.collections.BBBC009 property) (bioimageloader.collections.BBBC018 property) (bioimageloader.collections.BBBC020 property) (bioimageloader.collections.BBBC030 property) (bioimageloader.collections.BBBC039 property) (bioimageloader.collections.Cellpose property) (bioimageloader.collections.ComputationalPathology property) (bioimageloader.collections.DigitalPathology property) (bioimageloader.collections.DSB2018 property) (bioimageloader.collections.FRUNet property) (bioimageloader.collections.LIVECell property) (bioimageloader.collections.MurphyLab property) (bioimageloader.collections.S_BSST265 property) (bioimageloader.collections.StarDist property) (bioimageloader.collections.TNBC property) (bioimageloader.collections.UCSB property) (bioimageloader.common.CommonMaskDataset property) B BatchDataloader (class in bioimageloader) (class in bioimageloader.batch) BBBC002 (class in bioimageloader.collections) BBBC004 (class in bioimageloader.collections) BBBC006 (class in bioimageloader.collections) BBBC007 (class in bioimageloader.collections) BBBC008 (class in bioimageloader.collections) BBBC009 (class in bioimageloader.collections) BBBC013 (class in bioimageloader.collections) BBBC014 (class in bioimageloader.collections) BBBC015 (class in bioimageloader.collections) BBBC016 (class in bioimageloader.collections) BBBC018 (class in bioimageloader.collections) BBBC020 (class in bioimageloader.collections) BBBC021 (class in bioimageloader.collections) BBBC026 (class in bioimageloader.collections) BBBC030 (class in bioimageloader.collections) BBBC039 (class in bioimageloader.collections) BBBC041 (class in bioimageloader.collections) BinarizeMask (class in bioimageloader.transforms) bioimageloader module bioimageloader.base module bioimageloader.batch module bioimageloader.collections module bioimageloader.common module bioimageloader.transforms module bioimageloader.utils module bundle_list() (in module bioimageloader.utils) C Cellpose (class in bioimageloader.collections) ChannelReorder (class in bioimageloader.transforms) CommonDataset (class in bioimageloader.common) CommonMaskDataset (class in bioimageloader.common) ComputationalPathology (class in bioimageloader.collections) ConcatDataset (class in bioimageloader) (class in bioimageloader.batch) Config (class in bioimageloader) D Dataset (class in bioimageloader.base) DatasetInterface (class in bioimageloader.base) DigitalPathology (class in bioimageloader.collections) DSB2018 (class in bioimageloader.collections) E expand_to_rgb() (in module bioimageloader.utils) ExpandToRGB (class in bioimageloader.transforms) F file_list (bioimageloader.base.DatasetInterface property) (bioimageloader.collections.BBBC002 property) (bioimageloader.collections.BBBC004 property) (bioimageloader.collections.BBBC006 property) (bioimageloader.collections.BBBC007 property) (bioimageloader.collections.BBBC008 property) (bioimageloader.collections.BBBC009 property) (bioimageloader.collections.BBBC013 property) (bioimageloader.collections.BBBC014 property) (bioimageloader.collections.BBBC015 property) (bioimageloader.collections.BBBC016 property) (bioimageloader.collections.BBBC018 property) (bioimageloader.collections.BBBC020 property) (bioimageloader.collections.BBBC021 property) (bioimageloader.collections.BBBC026 property) (bioimageloader.collections.BBBC030 property) (bioimageloader.collections.BBBC039 property) (bioimageloader.collections.BBBC041 property) (bioimageloader.collections.Cellpose property) (bioimageloader.collections.ComputationalPathology property) (bioimageloader.collections.DigitalPathology property) (bioimageloader.collections.DSB2018 property) (bioimageloader.collections.FRUNet property) (bioimageloader.collections.LIVECell property) (bioimageloader.collections.MurphyLab property) (bioimageloader.collections.S_BSST265 property) (bioimageloader.collections.StarDist property) (bioimageloader.collections.TNBC property) (bioimageloader.collections.UCSB property) (bioimageloader.common.CommonDataset property) (bioimageloader.common.CommonMaskDataset property) fill_save_mask() (bioimageloader.collections.MurphyLab method) FRUNet (class in bioimageloader.collections) G get_dataset_from_directory() (in module bioimageloader.utils) get_image() (bioimageloader.base.DatasetInterface method) (bioimageloader.collections.BBBC002 method) (bioimageloader.collections.BBBC004 method) (bioimageloader.collections.BBBC006 method) (bioimageloader.collections.BBBC007 method) (bioimageloader.collections.BBBC008 method) (bioimageloader.collections.BBBC009 method) (bioimageloader.collections.BBBC013 method) (bioimageloader.collections.BBBC014 method) (bioimageloader.collections.BBBC015 method) (bioimageloader.collections.BBBC016 method) (bioimageloader.collections.BBBC018 method) (bioimageloader.collections.BBBC020 method) (bioimageloader.collections.BBBC021 method) (bioimageloader.collections.BBBC026 method) (bioimageloader.collections.BBBC030 method) (bioimageloader.collections.BBBC039 method) (bioimageloader.collections.BBBC041 method) (bioimageloader.collections.Cellpose method) (bioimageloader.collections.ComputationalPathology method) (bioimageloader.collections.DigitalPathology method) (bioimageloader.collections.DSB2018 method) (bioimageloader.collections.FRUNet method) (bioimageloader.collections.LIVECell method) (bioimageloader.collections.MurphyLab method) (bioimageloader.collections.S_BSST265 method) (bioimageloader.collections.StarDist method) (bioimageloader.collections.TNBC method) (bioimageloader.collections.UCSB method) (bioimageloader.common.CommonDataset method) get_mask() (bioimageloader.base.MaskDataset method) (bioimageloader.collections.BBBC004 method) (bioimageloader.collections.BBBC006 method) (bioimageloader.collections.BBBC007 method) (bioimageloader.collections.BBBC008 method) (bioimageloader.collections.BBBC009 method) (bioimageloader.collections.BBBC018 method) (bioimageloader.collections.BBBC020 method) (bioimageloader.collections.BBBC030 method) (bioimageloader.collections.BBBC039 method) (bioimageloader.collections.Cellpose method) (bioimageloader.collections.ComputationalPathology method) (bioimageloader.collections.DigitalPathology method) (bioimageloader.collections.DSB2018 method) (bioimageloader.collections.FRUNet method) (bioimageloader.collections.LIVECell method) (bioimageloader.collections.MurphyLab method) (bioimageloader.collections.S_BSST265 method) (bioimageloader.collections.StarDist method) (bioimageloader.collections.TNBC method) (bioimageloader.collections.UCSB method) (bioimageloader.common.CommonMaskDataset method) get_maskdataset_from_directory() (in module bioimageloader.utils) grayscale (bioimageloader.base.Dataset property) grayscale_mode (bioimageloader.base.Dataset property) H HWCToCHW (class in bioimageloader.transforms) I imread_asarray() (in module bioimageloader.utils) IterBatchDataloader (class in bioimageloader.batch) IterDataset (class in bioimageloader.base) L LIVECell (class in bioimageloader.collections) load_datasets() (bioimageloader.Config method) M MaskDataset (class in bioimageloader.base) MaskDatasetProto (class in bioimageloader.utils) module bioimageloader bioimageloader.base bioimageloader.batch bioimageloader.collections bioimageloader.common bioimageloader.transforms bioimageloader.utils MurphyLab (class in bioimageloader.collections) N NormalizePercentile (class in bioimageloader.transforms) num_channels (bioimageloader.base.Dataset property) num_samples (bioimageloader.base.Dataset property) O output (bioimageloader.base.Dataset property) (bioimageloader.base.MaskDataset property) R random_label_cmap() (in module bioimageloader.utils) random_split_dataset() (in module bioimageloader.utils) replace_commonpath() (bioimageloader.Config method) RGBToGray (class in bioimageloader.transforms) rle_decoding_inseg() (in module bioimageloader.utils) root_dir (bioimageloader.base.Dataset property) (bioimageloader.base.DatasetInterface property) S S_BSST265 (class in bioimageloader.collections) save_coco_to_tif() (bioimageloader.collections.LIVECell method) save_xml_to_tif() (bioimageloader.collections.ComputationalPathology method) set_grayscale() (bioimageloader.Config method) set_ouput() (bioimageloader.Config method) set_training() (bioimageloader.Config method) split_dataset_by_indices() (in module bioimageloader.utils) SqueezeGrayImageCHW (class in bioimageloader.transforms) SqueezeGrayImageHWC (class in bioimageloader.transforms) stack_channels() (in module bioimageloader.utils) stack_channels_to_rgb() (in module bioimageloader.utils) StarDist (class in bioimageloader.collections) T TNBC (class in bioimageloader.collections) to_gray() (bioimageloader.base.Dataset static method) ToGrayBySum (class in bioimageloader.transforms) transforms (bioimageloader.base.Dataset property) U UCSB (class in bioimageloader.collections)